- Open Access
Parameter-sweeping techniques for temporal dynamics of neuronal systems: case study of Hindmarsh-Rose model
© Barrio, Shilnikov; licensee Springer 2011
- Received: 1 February 2011
- Accepted: 11 July 2011
- Published: 11 July 2011
Development of effective and plausible numerical tools is an imperative task for thorough studies of nonlinear dynamics in life science applications.
We have developed a complementary suite of computational tools for two-parameter screening of dynamics in neuronal models. We test a ‘brute-force’ effectiveness of neuroscience plausible techniques specifically tailored for the examination of temporal characteristics, such duty cycle of bursting, interspike interval, spike number deviation in the phenomenological Hindmarsh-Rose model of a bursting neuron and compare the results obtained by calculus-based tools for evaluations of an entire spectrum of Lyapunov exponents broadly employed in studies of nonlinear systems.
We have found that the results obtained either way agree exceptionally well, and can identify and differentiate between various fine structures of complex dynamics and underlying global bifurcations in this exemplary model. Our future planes are to enhance the applicability of this computational suite for understanding of polyrhythmic bursting patterns and their functional transformations in small networks.
- Periodic Orbit
- Lyapunov Exponent
- Interspike Interval
- Phase Point
- Homoclinic Bifurcation
Individual and networked neurons can generate various complex oscillations known as bursting, formed by alternating fast repetitive spiking and quiescent or subthreshold oscillatory phases. Bursting is a manifestation of composite, multiple time scale dynamics observed in various fields of science as diverse as food chain ecosystems, nonlinear optics, medical studies of the human immune system, and neuroscience. The role of bursting is especially important for rhythmic movements determined by Central Pattern Generators (CPG). Many CPGs can be multifunctional and produce polyrhythmic bursting patterns on distinct time scales, like fast swimming and slow crawling in leeches . Such CPGs are able to switch between different rhythms when perturbed [2, 3].
In mathematical neuroscience a deterministic description of endogenously oscillatory activities, like two-time scale bursting, is done by revealing generic properties of mathematical and realistic models of neurons; the latter are derived through the Hodgkin-Huxley formalism for gating variables. Either bursting model falls into a class of dynamical systems with at least two time scales, known as slow-fast systems.
Configurations and classification schemes for bursting activities in neuronal models first proposed in  and extended in [5, 6] are based on geometrically transparent mechanisms that initiate and terminate the so-called slow motion manifolds composed of the limiting solutions, such as equilibria and limit cycles, of the fast subsystem of a model [7–11]. These manifolds constitute the backbones of bursting patterns in a neuronal model. A typical Hodgkin-Huxley model possesses a pair of such manifolds : quiescent and tonic spiking. The existing classifications of bursting are based on codimension-one bifurcations that initiate or terminate the fast trajectory transitions between such one-dimensional [1D] and two-dimensional [2D] slow motion manifolds in the phase space of a model. These classifications single out the classes of bursting by subdividing neuronal models into the following types: elliptic or Hopf-fold; square-wave burster, or fold-homoclinic; parabolic, or circle-circle class describing top-hat models. These terms are either due to specific shapes of voltages traces in time, or after the static underlying bifurcations that occur in the fast subsystem of the given neuron model.
These manifolds, especially their stable branches, can be easily traced and visualized in the phase space by utilizing the slow variable as a sweeping parameter in the decoupled fast subsystem. Far from bifurcations, this slow-fast dissection approach allows for exhaustive simplifications that let one treat the dynamics of the full model as on overlay the uncorrelated dynamics of its fast subsystem mediated by repetitive passages of the slow variable.
The slow-fast dissection has been proven to work very well for a low-order model of a bursting neuron as long as it stays away from a bifurcation that is due to reciprocal interactions of the dynamics of both subsystems. Such a bifurcation, underlying a bursting transition(s), gives rise to the emergence of dynamical phenomena that can only occur in the full system. For example, this occurs when the dynamics of the fast subsystem falls to the time scale of the slow subsystem, particularly near saddle-node and homoclinic bifurcations. A classic example is the onset of chaotic dynamics of finite subshift shown by D. Terman  at the transition between tonic spiking and bursting that happens to be generic for a square-wave burster like the Hindmarsh-Rose model [13–15]. In addition  gives an explanation of common spike adding cascade in classical square-wave bursters which is due to a slow passage of the phase point near the saddle in the fast subsystem. Note that the nature of spike adding cascade could be bifurcationally different, as for example in the leech interneuron model due to the blue sky catastrophe  prolonging the burst duration phase, or because of homoclinics of a saddle periodic orbit [17, 18] playing the role of the chaotic potential barrier, loosely speaking, that bursting should overcome to get an extra spike.
Complex dynamics, including quick period doubling cascades in square wave bursters [19, 20] can also be explained in terms of codimension-two homoclinic bifurcations, including inclination-switch and orbit-flips, that occur at the transition [21, 22] from tonic spiking to bursting. Recent breakthrough examples of novel transitions to and from bursting due to reciprocal interactions of slow-fast dynamics include various homoclinic of saddles and saddle-foci, the blue sky catastrophe, bistability due non-transverse homoclinics to saddle-node periodic orbits, canard-tori [13, 16–18, 23–26]. The range of bifurcations and dynamical phenomena giving rise to bursting transcends the existing static classification schemes based solely on slow-fast dissection.
In-depth understanding of the generic mechanisms combined into a broad global picture on the transition patterns between the activity types in typical models of individual neurons presents a fundamental challenge for the theory of applied dynamical systems. In response to variations of intrinsic parameters, or an external applied current, like I in (1), a neuron model should demonstrate, migrate, and switch flexibly between various types of activities such as quiescence, tonic spiking and bursting. In addition, nonlinearity of the model can often imply bi- or multi-stability of several co-existing activities at the same parameter values. Bistability of coexisting oscillatory patterns originate near global bifurcations taking place in the model. Multistability is well noticeable when a targeted activity can be robustly selected by choosing other initial conditions or by temporal perturbations, like applied external current. Having ascertained such a global picture we can make consistent predictions for determining basic principles of the functioning of coupled neurons on networks where they receive mixed, inhibitory and excitatory perturbations from other neurons and synergetically reciprocate.
The applied dynamical systems community has developed a universal and versatile suite of computational tools and techniques for comprehensive examination of diverse nonlinear systems of various origins including life sciences. These tools allow a researcher to mono- and bi-parametrically scan the model in question to search for specific transformations corresponding to local and global bifurcations that often hard to detect by standard means. One approach to an initial examination of an unknown model, often called ‘brute-force’ approach, is to evaluate the largest Lyapunov exponent. This approach has long been widely utilized in nonlinear dynamics for initial detection of bifurcations of steady state and oscillatory solutions. The brute-force approach contrasts drastically from examination of fine bifurcation structure of limit solutions of the system. Nevertheless, if performed extensively the brute force approach reveals adequately the backbone of the bifurcation structure of the model, which can be further enhanced and complemented with detailed bifurcation analysis that would provide the finishing touches, in the form of bifurcations curves, to the initial brute force diagram. We point out that transformations reshaping bursting waveforms en route toward the tonic spiking activity are caused by atypical bifurcations due to the presence of two, or more time scales in bursting. Because of that bifurcations of stiff bursting solutions, especially irregular ones, are hard to trace down by parameter continuation software packages such as CONTENT and AUTO-based packages, which are specifically designed mainly for explorations of equilibria and ‘typical’ periodic orbits.
The primary goal of this paper is to demonstrate that straightforward methods used in neuroscience experimental studies can be as effective as conventional tools, based on the bifurcation and Lyapunov exponent theory, employed in nonlinear dynamics studies. In this paper, we revisit and examine transformations of various oscillatory activity types in the phenomenological Hindmarsh-Rose model of bursting neurons, viewed, so to speak, through the prism of neuroscience plausible methods. Next we compare our findings with the results obtained using the evaluation of a maximal Lyapunov exponent that was presented in detail in [27, 28] which we consider as an etalon. More specifically, as a part of the comparison test, we place next to each other the bifurcation diagrams found using calculus-based computational tools yielding the whole spectrum of the Lyapunov exponents for complete solutions of the model and those obtained through examinations of 1D voltage traces, which are typically available in experimental studies. We then extract various qualitative temporal characteristic of neuronal activity from non-transient fragments of such traces, including the number of spikes per regular burst, deviations of the spike numbers in case of chaotic bursting, interspike intervals, burst duration and period, and the duty cycle which is the ‘spiking’ fraction of the bursting period. By varying two control parameters of the model, we basically perform bi-parametric sweeps of its dynamics that are aimed to detect in a very straightforward manner various global bifurcations including • transitions between quiescence, tonic spiking and bursting activities including ones through various homoclinic bifurcations; • identify regular and chaotic transformation of bursting, including a change of the bursting topology accompanying square wave to plateau-like transitioning, as well as forward and backward sequences of spike-addition and -deletion, and so forth.
here, x is treated as the membrane potential, while y and z describe some fast and slow gating variables for ionic currents, respectively. Slow ‘activation’ of z is due to the small parameter . The parameters in (1) are typically set as follows and , so that regular bursting oscillations in the model at an ‘applied current’ , which belongs to the square-wave type at , and transforms to a plateau-like bursting at , see Figure 1. Along with ‘intrinsic,’ b, and ‘external,’ I, bifurcation parameters the dynamics of the model are sensitive to variations to other parameters: ε being treated as a rate of activation for some current, and being viewed as a control parameter delaying and advancing the activation of the slow current in the modeled neuron. In response to variations of intrinsic parameters, or an external applied current, like I in (1), a neuron model should demonstrate, migrate, and switch flexibly between various types of activities such as quiescence, tonic spiking and bursting.
In this section we will brief the core of the numerical techniques employed in the analysis of the HR model. We will start with the specifics of the numerical integration of the differential equations of the model (1).
Therefore, the problem is reduced to the determination of the Taylor coefficients . This can be done efficiently by using automatic differentiation techniques (see details in ).
The Taylor method has several unique features [32, 33]. One of its features is that it explicitly provides a dense output in the form of a power series, which becomes highly useful for detecting various instantaneous events, for example moments at which a solution hits a Poincaré cross-section, reaches a voltage maximum, for example, if one need to counts spikes in bursts, and so on. In addition, the method can be formulated using the interval arithmetics, which is often employed in the computer-assisted proofs of chaos nowadays. The Taylor method also provides high-precision solutions of ODEs so demanded in studies of systems exhibiting multiple time-scale dynamics in moderately stiff systems. In this work we use a Taylor series method of order 15 with an error tolerance set to for the most of the simulations. At this tolerance level the TIDES software is as fast and slightly more accurate  than the code DOPRI853 developed by Hairer and Wanner . Note that TIDES is a general purpose software, and so it can be apply to general ODE systems, and not only to the HR model. We note also that we have employed the Taylor series method for solving variational equations and computations of the Lyapunov exponent spectrum, which are viewed as nonstandard options for the method . As remarked, in the numerical simulations it is possible to use several good general ODE solvers, but the main advantage of the Taylor method in this kind of studies is that it provides most of the requirements we need for the problem, accuracy when needed, easy events detection, direct dense output as a power series and easy implementation of variational equations.
As mentioned above, the continuous output generated by the integrator based on the Taylor series method is able to detect accurately and effectively various instantaneous events such as whether the phase point hits a cross-section or reaches some critical value like voltage maximum/minimum, or the number of spikes per burst approaches the sought value, which is the underlying idea for the spike-counting (SC) technique . In combination, the methods allows us to classify the solutions of the HR model in neuroscience terms: no spike - quiescence (convergence to a stable equilibrium point); single tonic spike - a round periodic orbit (like one around the manifold ); multiple spikes within a train - bursting orbit composed of alternating tonic spike and pseudo-quiescent periods, as well as distinguishing chaotic behaviors characterized by wide variations of spike numbers in burst trains. Besides, the SC-technique allows for indirect evaluations of the duty-cycle [DC] of the orbit, which is a fraction of the burst period (that is, the ratio ) of regular, periodic dynamics. Long bursting implies a duty-cycle close to one, meaning that the neuron is active most of the time; on the other hand if DC is close to zero the neuron generates rare spikes, mostly staying in the quasi-quiescent state. Finally, the continuous output of the Taylor series is also used in constructing bifurcation diagrams based on the variability of intervals between the spikes.
The other technique that we use in this paper is the computation of the Lyapunov exponents for solutions of the HR model. In bounded systems the existence of a positive Lyapunov exponent is associated with chaotic motions, and any orbit on a compact set that does not converge to an equilibrium point has at least one zero Lyapunov exponent. Accordingly, computation of the largest Lyapunov exponents yields important information about the kind of orbits present in the system. The corresponding algorithm for the computation of the Lyapunov spectrum is a combination of the classical methods proposed by [36, 37] and the ability of TIDES to compute solutions of the variational equations directly. The first variational equations of the system are integrated with the identity matrix as an initial condition, creating a canonical orthonormal basis which is mapped onto a new set of vectors. In a chaotic system each vector tends to expand along the local direction of most rapid growth, so to avoid this problem the Gram-Schmidt orthonormalization process is applied. Later the Lyapunov exponents are calculated from the growth of areas given by the different propagated vectors (for more details see [37, 38]).
Figure 3(A, B) presents the -parameter spike-counting (SC) and duty-cycle (DC) diagrams of the HR model. Similar SC diagrams for the model were previously reported in . The color-scale bar on the right in Inset (A) yields the number of spikes within a burst. The diagram for the duty-cycle evolution is shown in Inset (B). By combining these diagrams, we can partition the parameter plane into regions of different kinds of behaviors and classify the regimes: tonic-spiking (single spike), square-wave and plateau-like bursting, quiescence, and chaotic behaviors with the variability of spikes exceeding some preset limit. It is easy to see that both diagrams give consistent results. They reveal with clarity the region of tonic-spiking where both DC and SN take minimum values, below which there is the bursting region at the right bottom corner of the diagram. Bursting emerges from tonic spiking through the spike-addition cascade in two different ways: one is regular and reversible; the corresponding transitions are foliated by the bifurcation curves. The second kind of transitions is due to the clove-shaped regions (shown in red in Figure 4) corresponding to well-developed chaotic dynamics in the model.
Another interesting behavioral phenomenon reshaping the type of bursting occurs in the top-left corner of the diagrams. In this region of bursting with a high number of spikes transforms into bursting with a drastically lower number of spikes per burst. To elucidate what happens on the border between these regions, we visually examined the orbits of the model. We found the border corresponding to the transition between square-wave and plateau-like bursting (see the waveforms in Figure 1 corresponding to the selected points in Figure 3(A)). The corresponding planar bifurcations underlying the robust bursting configurations of both types are well described in the literature, see [6, 21]. The bursting type depends on the way the slow-motion tonic spiking manifold terminates in the phase space of the fast subsystem of the HR model. In the square-wave bursting case, the burst termination is due to a homoclinic bifurcation, also known as - fold/homoclinic, whereas in the case of plateau-like, or fold/Hopf, bursting is due to the reverse supercritical Andronov-Hopf bifurcation (Figures 12). In essence, this means that the parameters b and I change the structure of the fast subsystem of the HR model so that the homoclinic bifurcation is no longer transverse in the z-parametric cutaway in the singular limit . Figure 2 elaborates on the metamorphoses of the structure transformations. One can see that plateau-like bursting takes the place of square-wave bursting after the spiking manifold, , becomes tangent to the saddle branch of in the middle of and further terminates on the upper depolarized branch of through the supercritical Andronov-Hopf bifurcation. In general, this is not a cod-1 bifurcation, but a degeneracy due to loss of transversality.
The HR model can exhibit complex, chaotic bursting with a large number of spikes, especially near transitions to hyperpolarized quiescence (see Figure 3). In context of the dynamics of the model, bursting is technically treated as chaotic if trains have more than 25 unlike spikes with distinct interspike intervals. A large number of spikes can also be generated by periodic bursting. In order to differentiate between regular and chaotic bursting behaviors, we have also used another computational technique. The complete spectrum of the Lyapunov exponents was evaluated for the orbits of the model as the two parameters were varied within the same range. In the simulations we discard a transient time of 103 and we integrate till 105 with the algorithm to compute the exponents and using as initial conditions the last value of the previous simulation. The corresponding sweeping diagram is shown in Figure 4. In the diagram, shown in the yellow-orange scale refers to the regions where the first Lyapunov exponent is positive. This means the occurrence of chaotic dynamics in the model. The gray-colored regions are where the second Lyapunov exponent is negative while the first Lyapunov exponent remain zero on periodic orbits. The Lyapunov exponent based diagram also reveals the spike adding transitions, and the corresponding bifurcation lines can be drawn where the 2nd Lyapunov exponent reaches the maximal value of zero. This implies that the bifurcating bursting orbit is about to disappear and will be replaced by the successive bursting orbit with an extra spike in each train. Spike adding transitions were observed and studied in several neuron models, including the Chay and Hindmarsh-Rose mathematical models [15, 39, 40], and the leech heart interneuron . Note that there are several universal scenarios for such cascades, including saddle-node bifurcations, homoclinic bifurcations of saddle equilibria [19, 41] and periodic orbits , as well as through the blue sky catastrophe [21, 22].
Indeed, the fact that the interspike interval grows by the end of the burst is a signature of square-wave bursters. Recall that these bursters are also code-named fold/homoclinic meaning that the spiking, slow-motion manifold is terminated through a homoclinic bifurcation of the saddle that occurs in the fast subsystem of the model, see Figure 2. The dwelling time of the phase point along the bursting orbit grows logarithmically fast the closer the point comes to the saddle . The increase of the dwelling time is a generic phenomenon for all systems in a neighborhood of a saddle. What makes this phenomenon special for slow-fast systems is that the time scale of dynamics of the fast subsystem near the saddle turns out to be that of the slow subsystem, which gives rise to another peculiar phenomenon of ‘delayed loss of instability’ such that the phase point, previously turning around the spiking manifold, can be dragged along the middle, saddle branch of equilibria possibly all the way to the upper fold, provided that the timing is right, that is, the phase meets the saddle point right on the edge of the spiking manifold (lousily speaking, we encounter another kind of solutions broadly called ‘canards’, commonly characterized by the fact that a canard can follow an unstable branch of a slow-motion manifold). If the phase point reaches the edge before the saddle, it falls down to the hyperpolarized branch of to start a new cycle of bursting. If the phase point travels past the saddle, then it goes up along the other leading unstable separatrix of the saddle, makes another turn around , resulting in the addition of an extra spike in the bursting orbit. Note that when the phase point does not approach the saddle, the model generates bursts with same number of spikes. Again, let us emphasize that such a spike adding mechanism is typical for square-wave or fold/homoclinic bursters; however, underlying mechanisms for spike adding can be completely different even in square wave bursters, and other neuronal models [19, 24, 40, 42], including the leech heart interneuron model [17, 18].
As it was said previously the HR model describes one of the most typical configurations of slow manifolds for square-wave bursting oscillations. First of all, the configuration needs the distinct Z-shape for the quiescent manifold, , with the lower branch corresponding to a hyperpolarized quiescent state of the neuron, while the upper unstable branch is surrounded by the spiking manifold, , foliated by the stable limit cycles of the fast subsystem in the square bursting case. The branch regains stability in the case of plateau-like bursting. The manifold terminates through the homoclinic bifurcation that occurs in the fast subsystem in the square bursting case. Between the lower fold and this homoclinic point, the system has a hysteresis which gives rise to bursting. In the bursting regime, the phase point of the HR model switches repeatedly between the spiking, , and quiescent, , manifolds when it reaches their ends. In addition, both manifolds must be transient for the passing solutions of (1), that is, must be cut by the slow nullcline through the middle, saddle branch below and above the hyperpolarized fold point. This guarantees that is also transient for the trajectories of the model that coil around while translating slowly towards the edge, which corresponds to the aforementioned homoclinic bifurcation. Thus, the rapid jump from the lower point on towards indicates the beginning of the spiking period of a burst followed by the resting phase when the phase point drifts slowly along towards the fold, onto which it lands right after the homoclinic bifurcation. The number of complete revolutions of the phase point around the spiking manifold, , gives the number of spikes within a burst, see Figures 2 and 6. Bursting in the model takes place as long as the slow nullcline hits between the points labeled HB, corresponding to the homoclinic bifurcation, and AH/SN standing for the singular Andronov-Hopf bifurcation in the full system, see Figure 7.
Thus, by varying we can make the model generate trains of bursts with various number of spikes. It is easy to see that the value of the small parameter ε determines the slow passage along both manifolds. So, halving ε should make bursts twice as long at least, with a doubled number of spikes. Note, too, that the duration of the quiescent phase should increase proportionally. As for variations of I are concerned, I moves, geometrically, the manifold horizontally in the 3D phase space of the model, in particular due to linearity of the slow equation in both variables. We show that because of that both I and act similarly on dynamics; of special interest here are transitions between the activity type of the model, which this section is focused on.
As of today, the Hindmarsh-Rose remains justifiably one of the most popular mathematical models, that describes, qualitatively well, the dynamics of a certain class of neuronal models derived using the Hodgkin-Huxley formalism. The model has been carefully analyzed using various mathematical and computational tools, and has been viewed though the prisms of the advanced bifurcation theory, geometric methods of slow-fast dynamical systems to reveal multiple peculiar qualitative features. Various brute force approaches [27, 28] have been applied to the model to reveal its quantitative or metric properties though the examination of the Lyapunov exponent spectrum and the number of spikes per period.
In this paper we have tested other computationally effective tools tailored specifically for models originating in neuroscience, including 1D and 2D parametric screenings of the complex dynamics of the model aimed to bridge notions common for neuroscience with the accurate mathematics-based findings. Our computational toolkit includes several methods for examining of temporal characteristics of a single variable, x, treated as a voltage across the cell membrane, or more specifically, the corresponding voltage waveforms. The list includes the spike-counting approach, the evaluations of inter-spike interval, and duty cycles of bursting, which is a ratio of the burst duration (active phase) over the total burst period. We confirmed our findings based on these methods with ‘calculus’-based simulations for the whole spectrum of the Lyapunov exponents calculated for solutions of a system of ordinary differential equations like the Hindmarsh-Rose model. Our verdict is that both approaches consistently demonstrate very good agreements. The methods allow us to give detailed explanations for various global bifurcations in the model, including various spike-addition/deletion cascades, phenomena of bistability, and various transitions between types of bursting: square-wave and plateau-like. This ensures that this toolkit of combined neuroscience-native methods and calculi-based algorithms will yield effective and timely insights for pilot studies of new, previously unidentified, in sense of dynamics and bifurcations, models of individual neurons, as well as other cells, such as myocytes - cardiac tissue cell. We showed in  that the proposed methods could provide the bifurcation details and add even problem-specific nuances into regulation control of temporal characteristics of realistic interneuron models of the leech. The evident advantage of the approach is its nativeness for the neuroscience community. Last but not least, it should emphasized that a 2D parameter sweeping of the model shown in Figures 3 and 4 takes about 10-20 times faster than the sweeping based on the Lyapunov exponents spectrum (Figure 5). A drawback of the approach is that it needs to be corrected in cases where the model is multistable; this remains common weakness of all straightforward methods unless one uses randomized initial conditions and longer transients that could overall substantially prolong the simulation time.
It is in our future plans to broaden the applicability of these proposed computational tools for studies of neuronal networks, especially for multifunctional central pattern generators comprised of several neurons [2, 46]. Such a multifunctional CPG is capable of generating multiple bursting rhythms at quite different time scale. It was shown recently in  that bursting outcomes of a multistable 3-cell network are determined by the duty cycle of bursting. Moreover, the longest bursting cell plays the role of the pacemaker of the network . Note also that bursting network can be composed of individually tonic spiking cells that while inhibiting, even weekly, each other can create various bursting outcomes of the network as a whole. This indicates directly that such a cell, whether tonic spiking or bursting, is to be close to the boundary separating the activity types in the parameter space of distinct interneurons [25, 26], in particular to control effectively the temporal characteristic of bursting, regular or chaotic. In the light of saying, it is evident that the tools native to neuroscience paradigms are suited more appropriately for studying bursting metamorphoses in networks and the side-by-side comparison of the results of mathematical and experimental studies using the common jargon. This computational toolkit shall bring us closer to the targeted goal - to build realistic and adequately responding models of concrete functional CPGs with specific time scales, phase locked states between synergetically coupled neurons with plausible bursting characteristics.
We would like to thank A. Neiman, J. Wojcik and B. Chung for very helpful comments. This work is supported by the Spanish Research project MTM2009-10767, and by NSF Grant DMS-1009591, RFFI Grant No. 08-01-00083, GSU Brain & Behaviors program, and MESRF ‘Attracting leading scientists to Russian universities’ project 14.740.11.0919.
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